Stem-loop hco-mir-5971

Accession

MI0020146

Description

Haemonchus contortus hco-mir-5971 precursor miRNA

Literature search

1 open access papers mention hco-mir-5971
(1 sentences)

Sequence

1528 reads, 14.0 reads per million, 21 experiments

cacuaucgcuuuguauauuGCGGGGGUGAUGAAUAGUgaaugggaaucucuaugaauGUAGAUGAUUUCAAAAAUCACGCGUCCUGACCCGcuugaagccugauggguggcaucg
.....((((..........))))((((.(.((...((((...(((((((((((....))))).)))))).....))))...)).).))))....((.(((........))).)).

Structure

--cacuaucgcuuuguauauuGCGG    G U  AUA    --aug      -     g 
                         GGGU A GA   GUga     ggaauc ucuau a
                         |||| | ||   ||||     |||||| |||||  
                         CCCA U CU   CACU     CUUUAG AGAUG a
gcuacgguggguaguccgaaguucG    G C  GCG    AAAAA      U     u 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5971-5p

• Accession: MIMAT0058006
• Description: Haemonchus contortus hco-miR-5971-5p mature miRNA
• Sequence: 20 - GCGGGGGUGAUGAAUAGU - 37
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5971-3p

• Accession: MIMAT0023478
• Description: Haemonchus contortus hco-miR-5971-3p mature miRNA
• Sequence: 58 - GUAGAUGAUUUCAAAAAUCACGCGUCCUGACCCG - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4