Stem-loop hco-mir-5975

Accession

MI0020151

Description

Haemonchus contortus hco-mir-5975 precursor miRNA

Sequence

uaauauuuauucaaaggaguggagagucggccgauuacuacaaccuucuuugacaaagUUGUAGUAAUCGGCUGACCCUCCAcuccuuugaaugacuaggaguu
......((((((((((((((((((.(((((((((((((((((((.............))))))))))))))))))).)))))))))))))))))).........

Structure

---uaauau                  a                   cuucu 
         uuauucaaaggaguggag gucggccgauuacuacaac     u
         |||||||||||||||||| |||||||||||||||||||     u
         aguaaguuuccucACCUC CAGUCGGCUAAUGAUGUUg     g
uugaggauc                  C                   aaaca 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5975

• Accession: MIMAT0023483
• Description: Haemonchus contortus hco-miR-5975 mature miRNA
• Sequence: 59 - UUGUAGUAAUCGGCUGACCCUCCA - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4