Stem-loop hco-mir-5976

Accession

MI0020153

Description

Haemonchus contortus hco-mir-5976 precursor miRNA

Sequence

122055 reads, 3542.0 reads per million, 21 experiments

caucucuccggacccccauuucaaugacaugaccguuuucuaggcgacgaguUGGUCAAAUAUCACCAUCUGCuaguuaugaaagUAGAUACGUGAUGUUCGACCGACucgagucgaauacccuucgauucau
.........((....))................(((((...)))))..(((((((((.((((((((.(((((((.........)))))))..)))))))).)))))))))((((((((.....))))))))..

Structure

caucucuccggacccccauuucaaugacaugaccguuuucuaggcgac         A        -C       agu 
                                                gaguUGGUC AAUAUCAC  AUCUGCu   u
                                                ||||||||| ||||||||  |||||||   a
                                                cuCAGCCAG UUGUAGUG  UAGAUga   u
-------------------------uacuuagcuucccauaagcugag         C        CA       aag 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5976-5p

• Accession: MIMAT0023485
• Description: Haemonchus contortus hco-miR-5976-5p mature miRNA
• Sequence: 53 - UGGUCAAAUAUCACCAUCUGC - 73
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5976-3p

• Accession: MIMAT0058008
• Description: Haemonchus contortus hco-miR-5976-3p mature miRNA
• Sequence: 86 - UAGAUACGUGAUGUUCGACCGAC - 108
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4