Stem-loop hco-mir-5977

Accession

MI0020155

Description

Haemonchus contortus hco-mir-5977 precursor miRNA

Sequence

cgucguuacgcuagagagaauuggacuucugugaaaguggaguguugcuuuauuugaguguuuuguuuuaauugaaugaagUAUGUUUAGUUAUAGAACCACGUucgauucuauuuaugcuuauga
..((((...((((((.((((((((((((((((((...((((....((((((((((((.((........)).))))))))))))..)))).))))))))....)))))))))).)))).))..))))

Structure

cg    uac  -    g          ----        aag    gugu            g  uuu 
  ucgu   gc uaga agaauuggac    uucuguga   ugga    ugcuuuauuuga ug   u
  ||||   || |||| ||||||||||    ||||||||   ||||    |||||||||||| ||    
  agua   cg auuu ucuuagcuUG    AAGAUAUU   AUUU    AUgaaguaaguu au   g
--    -uu  u    a          CACC        --G    --GU            a  uuu 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5977

• Accession: MIMAT0023487
• Description: Haemonchus contortus hco-miR-5977 mature miRNA
• Sequence: 82 - UAUGUUUAGUUAUAGAACCACGU - 104
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4