Stem-loop hco-mir-5978

Accession

MI0020156

Description

Haemonchus contortus hco-mir-5978 precursor miRNA

Sequence

7920 reads, 93.0 reads per million, 21 experiments

ugccaacaauucauuugcccaugUUCGAGACUAGAGUCACUCCGCAuucucugaugaaugUGGAGUGCUAAAAUGUUCUCGAAUaucaaauaggcauauuaugcgaguaggccucgcuc
((((........(((((...(((((((((((...((.((((((((((((......)))))))))))))).....).))))))))))))))).))))......(((((.....)))))..

Structure

-----------------------    aacaauuc     ccc          - --UAG  U            uc 
                       ugcc        auuug   augUUCGAGA C     AG CACUCCGCAuuc  u
                       ||||        |||||   |||||||||| |     || ||||||||||||   
                       acgg        uaaac   uaUAAGCUCU G     UC GUGAGGUguaag  g
cucgcuccggaugagcguauuau    -------a     ---          U UAAAA  -            ua 

Annotation confidence Medium

Genome context

Unknown

Mature hco-miR-5978-5p

• Accession: MIMAT0023488
• Description: Haemonchus contortus hco-miR-5978-5p mature miRNA
• Sequence: 24 - UUCGAGACUAGAGUCACUCCGCA - 46
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5978-3p

• Accession: MIMAT0058009
• Description: Haemonchus contortus hco-miR-5978-3p mature miRNA
• Sequence: 61 - UGGAGUGCUAAAAUGUUCUCGAAU - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4