Stem-loop hco-mir-5980

Accession

MI0020158

Description

Haemonchus contortus hco-mir-5980 precursor miRNA

Sequence

uuuucaacggcucaccuugcagAGGCACCUACAGAACUAUuauagugaauaguucugaaagugccucugcaaggugugccguuaaacucagcaaa
.....((((((.((((((((((((((((...((((((((((......))))))))))...)))))))))))))))).))))))............

Structure

-------uuuuc      u                CUA          au 
            aacggc caccuugcagAGGCAC   CAGAACUAUu  a
            |||||| ||||||||||||||||   ||||||||||   
            uugccg guggaacgucuccgug   gucuugauaa  g
aaacgacucaaa      u                aaa          gu 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5980

• Accession: MIMAT0023490
• Description: Haemonchus contortus hco-miR-5980 mature miRNA
• Sequence: 23 - AGGCACCUACAGAACUAU - 40
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4