Stem-loop hco-mir-5981

Accession

MI0020159

Description

Haemonchus contortus hco-mir-5981 precursor miRNA

Sequence

725 reads, 6.0 reads per million, 18 experiments

uuaaucuucuucccaucccugcUGUUUACAAAAUUAGGACCCUGCuucuguaaacAGCAGGGUCCUAAUUUUGUgaacagcagggaugggaaagugguaauguc
...(((...(((((((((((((((((((((((((((((((((((((.........)))))))))))))))))))))))))))))))))))))...)))......

Structure

---uua   uuc                                     ucu 
      auc   uucccaucccugcUGUUUACAAAAUUAGGACCCUGCu   g
      |||   |||||||||||||||||||||||||||||||||||||   u
      ugg   aaggguagggacgacaagUGUUUUAAUCCUGGGACGA   a
cuguaa   uga                                     caa 

Annotation confidence Medium

Genome context

Unknown

Mature hco-miR-5981-5p

• Accession: MIMAT0023491
• Description: Haemonchus contortus hco-miR-5981-5p mature miRNA
• Sequence: 23 - UGUUUACAAAAUUAGGACCCUGC - 45
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5981-3p

• Accession: MIMAT0058010
• Description: Haemonchus contortus hco-miR-5981-3p mature miRNA
• Sequence: 56 - AGCAGGGUCCUAAUUUUGU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4