Stem-loop hco-mir-5983

Accession

MI0020161

Description

Haemonchus contortus hco-mir-5983 precursor miRNA

Literature search

1 open access papers mention hco-mir-5983
(1 sentences)

Sequence

69026 reads, 774.0 reads per million, 21 experiments

cucguuucguggcgugcagugcGAGUCUAUCGUGUCUCAAAGCGaguauuaccugcUUUGGCACAUGUUAGGCCGGCAguacagcccgaguauuggaaguc
((.((((((.(((((((..(((..(((((.(((((.((((((((.((...)).)))))))).))))).)))))..))))))).))))))).)).)).....

Structure

-----  c  -    u   -    ag   GA     U     C        a  a 
     cu gu uucg ggc gugc  ugc  GUCUA CGUGU UCAAAGCG gu  
     || || |||| ||| ||||  |||  ||||| ||||| |||||||| || u
     gg ua gagc ccg caug  ACG  CGGAU GUACA GGUUUcgu ca  
cugaa  u  u    -   a    --   GC     U     C        c  u 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5983-5p

• Accession: MIMAT0058011
• Description: Haemonchus contortus hco-miR-5983-5p mature miRNA
• Sequence: 23 - GAGUCUAUCGUGUCUCAAAGCG - 44
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5983-3p

• Accession: MIMAT0023493
• Description: Haemonchus contortus hco-miR-5983-3p mature miRNA
• Sequence: 57 - UUUGGCACAUGUUAGGCCGGCA - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4