Stem-loop hco-mir-76

Accession

MI0020164

Description

Haemonchus contortus hco-mir-76 precursor miRNA

Sequence

33179 reads, 245.0 reads per million, 21 experiments

gcaucugucaccgucauucggaCGGACUUCAGCUCAACGAGUAccaacgucugcgauaUUCGUUGUUUAUGAAGCCUGGccgaguaggagacaucagaacauccc
.....((((.((...((((((.(((.(((((...((((((((((((.....)).).)))))))))....))))).))).)))))).)).))))............

Structure

-------gcauc    a  guc      a   A     -GCU         - -  a 
            uguc cc   auucgg CGG CUUCA    CAACGAGUA c ca c
            |||| ||   |||||| ||| |||||    ||||||||| | || g
            acag gg   ugagcc GUC GAAGU    GUUGCUUau g gu u
cccuacaagacu    a  --a      G   C     AUUU         a c  c 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-76-5p

• Accession: MIMAT0058014
• Description: Haemonchus contortus hco-miR-76-5p mature miRNA
• Sequence: 23 - CGGACUUCAGCUCAACGAGUA - 43
• Evidence: experimental ; Illumina [1]

Mature hco-miR-76-3p

• Accession: MIMAT0023496
• Description: Haemonchus contortus hco-miR-76-3p mature miRNA
• Sequence: 59 - UUCGUUGUUUAUGAAGCCUGG - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4