Stem-loop hco-mir-5985-1

Accession

MI0020165

Description

Haemonchus contortus hco-mir-5985-1 precursor miRNA

Sequence

451 reads, 9.0 reads per million, 19 experiments

gcgaggaugaAAACACUGACUUGUAACAUCGGCuggccaccagccgauguuacaAGUCAGUGUUUUUAUCCUCgca
((((((((((((((((((((((((((((((((((((...)))))))))))))))))))))))))))))))))))).

Structure

-                                    c 
 gcgaggaugaAAACACUGACUUGUAACAUCGGCugg  
 |||||||||||||||||||||||||||||||||||| c
 cgCUCCUAUUUUUGUGACUGAacauuguagccgacc  
a                                    a 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5985-5p

• Accession: MIMAT0023497
• Description: Haemonchus contortus hco-miR-5985-5p mature miRNA
• Sequence: 11 - AAACACUGACUUGUAACAUCGGC - 33
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5985-1-3p

• Accession: MIMAT0058015
• Description: Haemonchus contortus hco-miR-5985-1-3p mature miRNA
• Sequence: 55 - AGUCAGUGUUUUUAUCCUC - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4