Stem-loop hco-mir-5985-2

Accession

MI0020166

Description

Haemonchus contortus hco-mir-5985-2 precursor miRNA

Sequence

85 reads, 1.0 reads per million, 14 experiments

cgaggauaaAAACACUGACUUGUAACAUCGGCugguggccaGCCGAUGUUACAAGUCAGUGUUuucauccucgc
(((((((.(((((((((((((((((((((((((((...))))))))))))))))))))))))))).))))))).

Structure

-       a                           u 
 cgaggau aAAACACUGACUUGUAACAUCGGCugg  
 ||||||| ||||||||||||||||||||||||||| g
 gcuccua uuUUGUGACUGAACAUUGUAGCCGacc  
c       c                           g 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5985-5p

• Accession: MIMAT0023497
• Description: Haemonchus contortus hco-miR-5985-5p mature miRNA
• Sequence: 10 - AAACACUGACUUGUAACAUCGGC - 32
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5985-2-3p

• Accession: MIMAT0058016
• Description: Haemonchus contortus hco-miR-5985-2-3p mature miRNA
• Sequence: 42 - GCCGAUGUUACAAGUCAGUGUU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4