Stem-loop hco-mir-5987

Accession

MI0020170

Description

Haemonchus contortus hco-mir-5987 precursor miRNA

Sequence

uguuggucucagucggucggcacuuaaaagcaccugcagguugguuaaucguugugguugaguaccacccAACCCGAUUGUGUUACAGCCUUgcagcucagc
((((((((......))))))))...........((((((((((....((.((((.(((((.((...)).))))))))).))....))))).)))))......

Structure

uguuggucucagucggucggcacuuaaaagcac     -     guua  c    u     a  a 
                                 cugca gguug    au guug gguug gu  
                                 ||||| |||||    || |||| ||||| || c
                                 gacgU CCGAC    UG UAGC CCAAc ca  
---------------------------cgacuc     U     AUUG  U    -     c  c 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5987

• Accession: MIMAT0023501
• Description: Haemonchus contortus hco-miR-5987 mature miRNA
• Sequence: 71 - AACCCGAUUGUGUUACAGCCUU - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4