Stem-loop hco-mir-190

Accession

MI0020171

Description

Haemonchus contortus hco-mir-190 precursor miRNA

Literature search

1 open access papers mention hco-mir-190
(1 sentences)

Sequence

accaccauaaGGAUAUGUAUGGGUGAGCUCGUUagaggguuuugacgcucaccuucacccgugacagauccagugaauccauaacgguaccggugaaaaacuc
..((((....((((.((((((((((((...((..(((.((....)).))))).))))))))).))).)))).(((....))).........))))........

Structure

------ac    ----------------auaa    A   -         CUC  Ua   g  u 
        cacc                    GGAU UGU AUGGGUGAG   GU  gag gu u
        ||||                    |||| ||| |||||||||   ||  ||| ||  
        gugg                    ccua aca ugcccacuu   ca  cuc ca u
cucaaaaa    ccauggcaauaccuaaguga    g   g         --c  --   g  g 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-190-5p

• Accession: MIMAT0023502
• Description: Haemonchus contortus hco-miR-190-5p mature miRNA
• Sequence: 11 - GGAUAUGUAUGGGUGAGCUCGUU - 33
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4