Stem-loop hhv6b-mir-Ro6-1

Accession

MI0020179

Description

Human herpesvirus 6B hhv6b-mir-Ro6-1 precursor miRNA

Sequence

gcgcgcuuucAAGCAGUCCCGAUCUAUGCGACucaccguguCGCGUUGGCAUCGGGCGCUGCUAUag
...........(((((((((((((((((((((.......)))))).))).)))))).))))))....

Structure

gcgcgcuuucA      -      -   -      uc 
           AGCAGU CCCGAU CUA UGCGAC  a
           |||||| |||||| ||| ||||||  c
           UCGUCG GGGCUA GGU GCGCug  c
-------gaUA      C      C   U      ug 

Annotation confidence Low

Genome context

Unknown

Mature hhv6b-miR-Ro6-1-5p

• Accession: MIMAT0023510
• Description: Human herpesvirus 6B hhv6b-miR-Ro6-1-5p mature miRNA
• Sequence: 11 - AAGCAGUCCCGAUCUAUGCGAC - 32
• Evidence: experimental ; cloned [1]

Mature hhv6b-miR-Ro6-1-3p

• Accession: MIMAT0023511
• Description: Human herpesvirus 6B hhv6b-miR-Ro6-1-3p mature miRNA
• Sequence: 42 - CGCGUUGGCAUCGGGCGCUGCUAU - 65
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 22114334
   Small RNA deep sequencing identifies microRNAs and other small noncoding RNAs from human herpesvirus 6B
   "Tuddenham L, Jung JS, Chane-Woon-Ming B, Dolken L, Pfeffer S"
   "J Virol (2012) 86:1638-1649