Stem-loop spu-mir-92d

Accession

MI0020183

Description

Strongylocentrotus purpuratus spu-mir-92d precursor miRNA

Literature search

1 open access papers mention spu-mir-92d
(2 sentences)

Sequence

gucgaggcuaguguaauucugugacagcuuugcagcaagUAUUGCACUUACCCCGGCUG
((((.((..((((((((.((((..((....))..)).)).))))))))..)).))))..

Structure

--    a  cu        u  -  ga  g 
  gucg gg  aguguaau cu gu  ca c
  |||| ||  |||||||| || ||  ||  
  CGGC CC  UCACGUUA ga cg  gu u
GU    C  AU        U  a  ac  u 

Annotation confidence Low

Genome context

AAGJ05134155.1: 22230-22288 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from spu-mir-92d

Mature spu-miR-92d

• Accession: MIMAT0023512
• Description: Strongylocentrotus purpuratus spu-miR-92d mature miRNA
• Sequence: 40 - UAUUGCACUUACCCCGGCUG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216218
   RNA deep sequencing reveals differential microRNA expression during development of sea urchin and sea star
   Kadri S, Hinman VF, Benos PV
   PLoS One (2011) 6:e29217