Stem-loop ath-MIR5997

Accession

MI0020191

Description

Arabidopsis thaliana ath-MIR5997 precursor miRNA

Sequence

acccauucucuagaucucaacagguuguuccuccuucuuccuauuuaguuacuugguuucaauugucucuuuuuuacauaugcuuaccuaggcuugaaacaauUGAAACCAAGUAGCUAAAUAGaaagaaggaggaggaaaccu
.....................(((((.((((((((((((.((((((((((((((((((((((((((.((............((((....))))..)).)))))))))))))))))))))))))).))))))))))))..)))))

Structure

acccauucucuagaucucaac     -g            c                          c  uuuuuuacauau    a 
                     agguu  uuccuccuucuu cuauuuaguuacuugguuucaauugu uc            gcuu c
                     |||||  |||||||||||| |||||||||||||||||||||||||| ||            ||||  
                     uccaa  gaggaggaagaa GAUAAAUCGAUGAACCAAAGUuaaca ag            cgga c
---------------------     ag            a                          a  ----------uu    u 

Annotation confidence Not enough data

Genome context

chr3: 10706765-10706908 [+]

Mature ath-miR5997

• Accession: MIMAT0023520
• Description: Arabidopsis thaliana ath-miR5997 mature miRNA
• Sequence: 104 - UGAAACCAAGUAGCUAAAUAG - 124
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22221297
   Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology
   "Zhang B, Xie D, Jin Z"
   "J Integr Plant Biol (2012) 54:73-86