Stem-loop ath-MIR5998a

Accession

MI0020192

Description

Arabidopsis thaliana ath-MIR5998a precursor miRNA MIR5998

Gene
family

RF04120; MIR5998

Sequence

5411 reads, 46.0 reads per million, 171 experiments

ugaacuuaaggagaaaacaaauuggaACAGUUUGUGUUUUGUUUUGUguuuuguuggauucguuacucuccaccgucgccgccauguacaauucucaaacucugacuucuuggaggcaauucuuccaauuuguuccaacaucACAAAACAAAACACAAACUGUuccaauuuguuuucucacaaaaugagaaguugac
..(((((...((((((((((((((((((((((((((((((((((((((...(((((((...((.((........)).))...............(((.....)))....(((((((.....))))))).....))))))).))))))))))))))))))))))))))))))))))))))..........)))))...

Structure

-ug     -------aag                                      uuu       uucguuacucuccaccgucgccgccauguacaauucucaaacucugacuuc       c 
   aacuu          gagaaaacaaauuggaACAGUUUGUGUUUUGUUUUGUg   uguugga                                                   uuggagg a
   |||||          ||||||||||||||||||||||||||||||||||||||   |||||||                                                   ||||||| a
   uugaa          cucuuuuguuuaaccuUGUCAAACACAAAACAAAACAc   acaaccu                                                   aaccuuc u
cag     gaguaaaaca                                      --u       ----------------------------------------------uguuu       u 

Annotation confidence Medium

Genome context

chr5: 3247236-3247432 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR5998a

Mature ath-miR5998a-5p

• Accession: MIMAT0023521
• Description: Arabidopsis thaliana ath-miR5998a-5p mature miRNA
• Sequence: 27 - ACAGUUUGUGUUUUGUUUUGU - 47
• Evidence: experimental ; Illumina [1]

Mature ath-miR5998a-3p

• Accession: MIMAT0053974
• Description: Arabidopsis thaliana ath-miR5998a-3p mature miRNA
• Sequence: 143 - ACAAAACAAAACACAAACUGU - 163
• Evidence: experimental ; unknown

References

1. PubMed ID: 22221297
   Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology
   "Zhang B, Xie D, Jin Z"
   "J Integr Plant Biol (2012) 54:73-86