Stem-loop ath-MIR5998b

Accession

MI0020193

Description

Arabidopsis thaliana ath-MIR5998b precursor miRNA MIR5998

Gene
family

RF04120; MIR5998

Sequence

3337 reads, 27.0 reads per million, 153 experiments

cucauuuugugagaaaacaaauuggaACAGUUUGUGUUUUGUUUUGUgauguuggaacaaauuggaagaauugccuccaagaagucagaguuugagaauuguacauggcggcgacgguggagaguaacgaauccaacaaaacACAAAACAAAACACAAACUGUuccaauuuguuuucuccuuaaguucacaaucgua
...((((...((((((((((((((((((((((((((((((((((((((.(((((((.....((.(.....(((((((((....(((...(((..............)))...)))..))))).))))).)))))))))...))))))))))))))))))))))))))))))))))))))...))))...........

Structure

--------cuc    ugu                                      --a       acaaa  g aagaa    -     agaa   aga   ugagaa 
           auuu   gagaaaacaaauuggaACAGUUUGUGUUUUGUUUUGUg   uguugga     uu g     uugc cucca    guc   guu      u
           ||||   ||||||||||||||||||||||||||||||||||||||   |||||||     || |     |||| |||||    |||   |||       
           ugaa   cucuuuuguuuaaccuUGUCAAACACAAAACAAAACAc   acaaccu     aa c     aaug gaggu    cag   cgg      u
augcuaacacu    uuc                                      aaa       -----  g -----    a     --gg   cgg   uacaug 

Annotation confidence Medium

Genome context

chr5: 3247228-3247424 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR5998b

Mature ath-miR5998b-5p

• Accession: MIMAT0023522
• Description: Arabidopsis thaliana ath-miR5998b-5p mature miRNA
• Sequence: 27 - ACAGUUUGUGUUUUGUUUUGU - 47
• Evidence: experimental ; Illumina [1]

Mature ath-miR5998b-3p

• Accession: MIMAT0053975
• Description: Arabidopsis thaliana ath-miR5998b-3p mature miRNA
• Sequence: 143 - ACAAAACAAAACACAAACUGU - 163
• Evidence: experimental ; unknown

References

1. PubMed ID: 22221297
   Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology
   "Zhang B, Xie D, Jin Z"
   "J Integr Plant Biol (2012) 54:73-86