Stem-loop ath-MIR4245

Accession

MI0020194

Description

Arabidopsis thaliana ath-MIR4245 precursor miRNA

Literature search

1 open access papers mention ath-MIR4245
(1 sentences)

Sequence

42799 reads, 295.0 reads per million, 179 experiments

gAAUUGUCAGUAUAAAUCUUUGAUCUGauacucuauuaguuaguaugugaauuucuuuuuaacaauuuucuuauucaugcgagagcuaucaauaaguauuagaACAAAGUUUUAUACUGACAAUUCAAucuuaccugauuuucaaaa
((((((((((((((((.(((((.(((((((((....(((((.....((((((....................)))))).....)))))......))))))))).))))).))))))))))))))))((((......)))).......

Structure

---------------------                U     A         --cuau     aguau      uucuuuuua 
                     gAAUUGUCAGUAUAAA CUUUG UCUGauacu      uaguu     gugaau         a
                     |||||||||||||||| ||||| |||||||||      |||||     ||||||          
                     CUUAACAGUCAUAUUU GAAAC agauuauga      aucga     uacuua         c
aaaacuuuuaguccauucuAA                U     A         auaacu     gagcg      uucuuuuaa 

Annotation confidence Medium

Genome context

chr5: 21161506-21161652 [+]

Mature ath-miR4245-5p

• Accession: MIMAT0053976
• Description: Arabidopsis thaliana ath-miR4245-5p mature miRNA
• Sequence: 2 - AAUUGUCAGUAUAAAUCUUUGAUCUG - 27
• Evidence: experimental ; unknown

Mature ath-miR4245-3p

• Accession: MIMAT0023523
• Description: Arabidopsis thaliana ath-miR4245-3p mature miRNA
• Sequence: 104 - ACAAAGUUUUAUACUGACAAUUCAA - 128
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22221297
   Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology
   "Zhang B, Xie D, Jin Z"
   "J Integr Plant Biol (2012) 54:73-86