Stem-loop ath-MIR5999

Accession

MI0020196

Description

Arabidopsis thaliana ath-MIR5999 precursor miRNA

Sequence

aauagagguucaauuuaauuUCUUCACUAUUAGACGGACAAagugaauauauaaauauaucuugauguacauaucauuuuugugacauuauugauauguacaugaagauauauuuauauauucaauugguccgacuugguccgucuaauagugaggaaauuaaaucaaaucucugcuuugaauuuugacuu
..((((((((..(((((((((((((((((((((((((((.(((((((((((((((((((((((.((((((((((((.(..((...))..).)))))))))))).)))))))))))))))))))..........)))).)))))))))))))))))))))))))))..))))))))................

Structure

--------------aa        ca                           A    ----------                   g            u uu  u 
                uagagguu  auuuaauuUCUUCACUAUUAGACGGAC Aagu          gaauauauaaauauaucuu auguacauauca u  ug  
                ||||||||  ||||||||||||||||||||||||||| ||||          ||||||||||||||||||| |||||||||||| |  || g
                gucucuaa  uaaauuaaaggagugauaaucugccug uuca          cuuauauauuuauauagaa uacauguauagu a  ac  
uucaguuuuaaguuuc        ac                           g    gccugguuaa                   g            u uu  a 

Annotation confidence Not enough data

Genome context

chr1: 7400802-7400992 [-]

Mature ath-miR5999

• Accession: MIMAT0023525
• Description: Arabidopsis thaliana ath-miR5999 mature miRNA
• Sequence: 21 - UCUUCACUAUUAGACGGACAA - 41
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22221297
   Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology
   "Zhang B, Xie D, Jin Z"
   "J Integr Plant Biol (2012) 54:73-86