miRBase entry: dpr-MIR156b

Stem-loop dpr-MIR156b


Accession
MI0020198
Description
Digitalis purpurea dpr-MIR156b precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
1 open access papers mention dpr-MIR156b
(3 sentences)

Sequence

agugUGACAGAAGAGAGUGAGCACacgcaggcuaauuguauacguguuuccuuuuguauacgugugcucacuugucuuucugucacaca
.(((((((((((((((((((((((((...........(((((((..........))))))))))))))))))).)).))))))))))).

Structure
a           -  -            gcaggcuaauu       uguu 
 gugUGACAGAA GA GAGUGAGCACac           guauacg    u
 ||||||||||| || ||||||||||||           |||||||     
 cacacugucuu cu uucacucgugug           cauaugu    c
a           u  g            -----------       uuuc 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature dpr-miR156b

Accession MIMAT0023527
Description Digitalis purpurea dpr-miR156b mature miRNA
Sequence 5 - UGACAGAAGAGAGUGAGCAC - 24
Evidence not_experimental

References

  1. PubMed ID: 22233149
    Comprehensive transcriptome analysis reveals novel genes involved in cardiac glycoside biosynthesis and mlncRNAs associated with secondary metabolism and stress response in Digitalis purpurea
    Wu B, Li Y, Yan H, Ma Y, Luo H, Yuan L, Chen S, Lu S
    BMC Genomics (2012) 13:15