Stem-loop ame-mir-6001

Accession

MI0020211

Description

Apis mellifera ame-mir-6001 precursor miRNA

Literature search

4 open access papers mention ame-mir-6001
(50 sentences)

Sequence

445663 reads, 7580.0 reads per million, 24 experiments

agGUAGGUAACGACUGAUGGGAACAcucugagauuuucuuuaaugUUCUCUUUGGUUGUUACCACUAG
.(((.((((((((((((.(((((((....((((...))))...))))))).)))))))))))))))..

Structure

-a   A            U       cucu    u 
  gGU GGUAACGACUGA GGGAACA    gaga  
  ||| |||||||||||| |||||||    |||| u
  UCA CCAUUGUUGGUU CUCUUgu    uucu  
GA   -            U       -aau    u 

Annotation confidence High

Genome context

CM000064.5: 2707108-2707175 [-]

Mature ame-miR-6001-5p

• Accession: MIMAT0023541
• Description: Apis mellifera ame-miR-6001-5p mature miRNA
• Sequence: 3 - GUAGGUAACGACUGAUGGGAACA - 25
• Evidence: experimental ; SOLiD [1]

Mature ame-miR-6001-3p

• Accession: MIMAT0023542
• Description: Apis mellifera ame-miR-6001-3p mature miRNA
• Sequence: 46 - UUCUCUUUGGUUGUUACCACUAG - 68
• Evidence: experimental ; SOLiD [1], Illumina [3]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805


2. PubMed ID: 22171334
   Detection of microRNAs in color space
   "Marco A, Griffiths-Jones S"
   "Bioinformatics (2012) 28:318-323


3. PubMed ID: 26853694
   MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
   "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
   "Insect Mol Biol (2016) 25:216-226