Stem-loop ame-mir-6003

Accession

MI0020213

Description

Apis mellifera ame-mir-6003 precursor miRNA

Sequence

guggcggcggguCACUCGGGGAAAAGAGGCCauuucacAGGUCUUUGCGUCUCGAUUcaccuucccugga
..((.((.((((...((((((...(((((((........)))))))...))))))...)))).))))...

Structure

-gu  c  c    CAC      AAA       auu 
   gg gg gggu   UCGGGG   AGAGGCC   u
   || || ||||   ||||||   |||||||    
   uc cc ucca   AGCUCU   UUUCUGG   c
agg  -  u    cUU      GCG       Aca 

Annotation confidence Low

Genome context

CM000055.5: 6904558-6904627 [-]

Mature ame-miR-6003-5p

• Accession: MIMAT0023545
• Description: Apis mellifera ame-miR-6003-5p mature miRNA
• Sequence: 13 - CACUCGGGGAAAAGAGGCC - 31
• Evidence: experimental ; SOLiD [1]

Mature ame-miR-6003-3p

• Accession: MIMAT0023546
• Description: Apis mellifera ame-miR-6003-3p mature miRNA
• Sequence: 39 - AGGUCUUUGCGUCUCGAUU - 57
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805


2. PubMed ID: 22171334
   Detection of microRNAs in color space
   "Marco A, Griffiths-Jones S"
   "Bioinformatics (2012) 28:318-323