Stem-loop ame-mir-6005

Accession

MI0020215

Description

Apis mellifera ame-mir-6005 precursor miRNA

Sequence

cgcacugucgacuagucgucaaagauuagaucgucagcaacuuaaguuuaagagaacAUAUGAACUCUUAUGUACGUGAuuacgauuucACAUGCGUAAGAGAUUAUAUGUuuucuugaagcuaauaaucaucgaaguagucauugaugauaacuagucgaua
.....(((((((((((((((((.(((((..(((........(((..(((((((((((((((((.((((((((((.((((........)))).)))))))))).)))))))))))))))))..))).......)))..))))).)))))))...))))))))))

Structure

cgcac          ---       a     ga   ucagcaac   ag                 A          C    uua 
     ugucgacuag   ucgucaa gauua  ucg        uua  uuuaagagaacAUAUGA CUCUUAUGUA GUGA   c
     ||||||||||   ||||||| |||||  |||        |||  ||||||||||||||||| |||||||||| ||||    
     auagcugauc   aguaguu cugau  agc        aau  aaguucuuuUGUAUAUU GAGAAUGCGU CAcu   g
-----          aau       a     ga   -uacuaau   cg                 A          A    uua 

Annotation confidence Low

Genome context

CM000056.5: 6903412-6903574 [+]

Mature ame-miR-6005-5p

• Accession: MIMAT0023549
• Description: Apis mellifera ame-miR-6005-5p mature miRNA
• Sequence: 58 - AUAUGAACUCUUAUGUACGUGA - 79
• Evidence: experimental ; SOLiD [1], Illumina [3-5]

Mature ame-miR-6005-3p

• Accession: MIMAT0023550
• Description: Apis mellifera ame-miR-6005-3p mature miRNA
• Sequence: 90 - ACAUGCGUAAGAGAUUAUAUGU - 111
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805


2. PubMed ID: 22458842
   Next-generation small RNA sequencing for microRNAs profiling in Apis mellifera: comparison between nurses and foragers
   "Liu F, Peng W, Li Z, Li W, Li L, Pan J, Zhang S, Miao Y, Chen S, Su S"
   "Insect Mol Biol (2012) 21:297-303


3. PubMed ID: 22171334
   Detection of microRNAs in color space
   "Marco A, Griffiths-Jones S"
   "Bioinformatics (2012) 28:318-323


4. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670


5. PubMed ID: 26853694
   MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
   "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
   "Insect Mol Biol (2016) 25:216-226