Stem-loop ame-mir-6006

Accession

MI0020217

Description

Apis mellifera ame-mir-6006 precursor miRNA

Sequence

caacccucgcuagggugagaaaaAUAACUGGGAAGAGAGAGGaauaauuaAUUUUCUUUUUCAGUUAUAAguuugcauucgagaaauu
.....((((.....(((((....((((((((.(((((((((..........)))))))))))))))))...)))))...)))).....

Structure

caacc    cuagg     aaaa        G         Gaau 
     cucg     gugag    AUAACUGG AAGAGAGAG    a
     ||||     |||||    |||||||| |||||||||     
     gagc     cguuu    UAUUGACU UUUUCUUUU    a
uuaaa    --uua     -gAA        -         Aauu 

Annotation confidence Low

Genome context

CM000062.5: 171756-171843 [+]

Mature ame-miR-6006-5p

• Accession: MIMAT0023553
• Description: Apis mellifera ame-miR-6006-5p mature miRNA
• Sequence: 24 - AUAACUGGGAAGAGAGAGG - 42
• Evidence: experimental ; SOLiD [1]

Mature ame-miR-6006-3p

• Accession: MIMAT0023554
• Description: Apis mellifera ame-miR-6006-3p mature miRNA
• Sequence: 51 - AUUUUCUUUUUCAGUUAUAA - 70
• Evidence: experimental ; SOLiD [1], Illumina [3]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805


2. PubMed ID: 22171334
   Detection of microRNAs in color space
   "Marco A, Griffiths-Jones S"
   "Bioinformatics (2012) 28:318-323


3. PubMed ID: 26853694
   MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
   "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
   "Insect Mol Biol (2016) 25:216-226