Stem-loop nta-MIR6019a

Accession

MI0020232

Description

Nicotiana tabacum nta-MIR6019a precursor miRNA

Literature search

1 open access papers mention nta-MIR6019a
(2 sentences)

Sequence

37866 reads, 3753.0 reads per million, 41 experiments

uccuaguugucaaaaguucgUACAGGUGACUUGUAAAUGUUUugcgaccuucuaauaugauacuggcaaaACAUUUACACGUACCUUGUAUGaacuuuugauucuagcuuug
..((((..((((((((((((((((((((.(.((((((((((((((.(...((......))...).)))))))))))))).))))).)))))))))))))))).)))).....

Structure

---uc    uu                -    A U              g ccu  ua 
     cuag  gucaaaaguucgUACA GGUG C UGUAAAUGUUUugc a   uc  a
     ||||  |||||||||||||||| |||| | |||||||||||||| |   ||   
     gauc  uaguuuucaaGUAUGU CCAU G ACAUUUACAaaacg u   ag  u
guuuc    -u                U    - C              g cau  ua 

Annotation confidence Medium

Genome context

Unknown

Mature nta-miR6019a-5p

• Accession: MIMAT0023583
• Description: Nicotiana tabacum nta-miR6019a-5p mature miRNA
• Sequence: 21 - UACAGGUGACUUGUAAAUGUUU - 42
• Evidence: experimental ; Illumina [2]

Mature nta-miR6019a-3p

• Accession: MIMAT0058018
• Description: Nicotiana tabacum nta-miR6019a-3p mature miRNA
• Sequence: 71 - ACAUUUACACGUACCUUGUAUG - 92
• Evidence: experimental ; unknown

References

1. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795


2. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28