miRBase entry: nta-MIR6021

Stem-loop nta-MIR6021


Accession
MI0020236
Description
Nicotiana tabacum nta-MIR6021 precursor miRNA


Sequence

287795 reads, 8527.0 reads per million, 46 experiments
agccuuuagagauuagagagUUGGAAGAGGCUGCUAUUGGAaucaaucgucccggguaagcaggcugcaacuaaggucaaguucaaucauguggcccgacaucuCAUCACAGUUCACUCCUUCCCAUAggcagcaaucuccgcucuuauuccaugguauuguuu
.(((....(((....((((((.(((.((.((((((..(((............(((((..(((((.((.((((.......)))))).)).))).)))))............((....)).....)))..))))))..))))))))))).)))...))).......

Structure
------a   uuua   auua      U   A  -G      AU   AaucaaucgucccggguaagcaggcugcaacuaaggucaaguucaaucauguggcccgacaucuCAUCAC  U 
       gcc    gag    gagagU GGA GA  GCUGCU  UGG                                                                      AG U
       |||    |||    |||||| ||| ||  ||||||  |||                                                                      ||  
       ugg    cuu    uucucg ccu cu  cgacgg  ACC                                                                      UC C
uuuguua   -uac   ---a      -   -  aa      AU   -----------------------------------------------------------------CUUCC  A 


Annotation confidence Medium
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR6021-5p

Accession MIMAT0023588
Description Nicotiana tabacum nta-miR6021-5p mature miRNA
Sequence 21 - UUGGAAGAGGCUGCUAUUGGA - 41
Evidence not_experimental

Mature nta-miR6021-3p

Accession MIMAT0058021
Description Nicotiana tabacum nta-miR6021-3p mature miRNA
Sequence 105 - CAUCACAGUUCACUCCUUCCCAUA - 128
Evidence experimental
unknown

References

  1. PubMed ID: 22307647
    MicroRNA regulation of plant innate immune receptors
    "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
    "Proc Natl Acad Sci U S A (2012) 109:1790-1795