Stem-loop stu-MIR6022

Accession

MI0020237

Description

Solanum tuberosum stu-MIR6022 precursor miRNA

Literature search

3 open access papers mention stu-MIR6022
(12 sentences)

Sequence

288482 reads, 10105.0 reads per million, 83 experiments

cugaacugaacaauacgauccuggauauucuccuuuccaucACUAACUUAUUUAGGCUCAGAGUUUcaaguuguaagguccucuuccugagucgauucaaaaccuuaugaaccuaacgcgacuugaucuuaaguuacauuuacgaaaccccaaucauggguagaggacucuguagucggucuaaauaacuuagugaUGGAAGGGAGAAUAUCCAGGAugguauuguuccguucaggg
((((((.(((((((((.(((((((((((((((((((((((((((((.(((((((((((((((((((((((((((.((((.(((.....))).....(((........)))))))...)))))))))((.(((((...))))).))...((((....)))).....))))))).....))))))))))).))))))))))))))))))))))))))))).))))))))).))))))..

Structure

--      u         g                             C           -----       ---------------------------------------         --a    ccucuuccugaguc 
  cugaac gaacaauac auccuggauauucuccuuuccaucACUAA UUAUUUAGGCU     CAGAGUU                                       Ucaaguugu   aggu              g
  |||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||     |||||||                                       |||||||||   ||||              a
  gacuug cuuguuaug uAGGACCUAUAAGAGGGAAGGUagugauu aauaaaucugg     gucucag                                       aguucagcg   ucca              u
gg      c         g                             c           cugau       gagauggguacuaaccccaaagcauuuacauugaauucu         caa    aguauuccaaaacu 

Annotation confidence Low

Genome context

JH137942.1: 830126-830362 [-]

Mature stu-miR6022-5p

• Accession: MIMAT0058177
• Description: Solanum tuberosum stu-miR6022-5p mature miRNA
• Sequence: 42 - ACUAACUUAUUUAGGCUCAGAGUUU - 66
• Evidence: experimental ; unknown

Mature stu-miR6022-3p

• Accession: MIMAT0023589
• Description: Solanum tuberosum stu-miR6022-3p mature miRNA
• Sequence: 197 - UGGAAGGGAGAAUAUCCAGGA - 217
• Evidence: not_experimental

References

1. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795