Stem-loop sly-MIR6022

Accession

MI0020238

Description

Solanum lycopersicum sly-MIR6022 precursor miRNA

Literature search

10 open access papers mention sly-MIR6022
(26 sentences)

Sequence

472886 reads, 21496.0 reads per million, 81 experiments

cCCUGAACGGAACAAUACGAUCcuggauauuauccuuuccaucacuaacuuauuucggcucaaaguuuuaaguugcaagguacucuuccuaagucaauucaaaacuucaugaaccuaacgcgacuugaucuuaaguuacauuuuacgaaaccucaaucuuggguagaggaccgugcaauugguuaaaacucggucuaaauaacuuagugaUGGAAGGGAGAAUAUCCAGGAugguauuguuccguucaggg
((((((((((((((((((.((((((((((((.((((((((((((((((.((((((.((((...((((((((((((((.(((.((((.((((((....((((........))))........((((((....))))))....................)))))).)))).))).))))))...)))))))).)))).)))))).)))))))))))))))).)))))))))))).))))))))))))))))))

Structure

                  G            a                c      c    caa        ---      a   a    u      ucaauucaaaacuucaugaaccuaacgc      a 
cCCUGAACGGAACAAUAC AUCcuggauauu uccuuuccaucacuaa uuauuu ggcu   aguuuuaa   guugca ggu cucu ccuaag                            gacuug u
|||||||||||||||||| |||||||||||| |||||||||||||||| |||||| ||||   ||||||||   |||||| ||| |||| ||||||                            ||||||  
gggacuugccuuguuaug uAGGACCUAUAA AGGGAAGGUagugauu aauaaa cugg   ucaaaauu   uaacgu cca gaga ggguuc                            uugaau c
                  g            G                c      u    --c        ggu      g   g    u      --------uaacuccaaagcauuuuaca      u 

Annotation confidence Medium

Genome context

chr11: 3158675-3158925 [+]

Mature sly-miR6022-5p

• Accession: MIMAT0055733
• Description: Solanum lycopersicum sly-miR6022-5p mature miRNA
• Sequence: 2 - CCUGAACGGAACAAUACGAUC - 22
• Evidence: experimental ; unknown

Mature sly-miR6022-3p

• Accession: MIMAT0023590
• Description: Solanum lycopersicum sly-miR6022-3p mature miRNA
• Sequence: 211 - UGGAAGGGAGAAUAUCCAGGA - 231
• Evidence: not_experimental

References

1. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795