Stem-loop stu-MIR6023

Accession

MI0020239

Description

Solanum tuberosum stu-MIR6023 precursor miRNA

Literature search

2 open access papers mention stu-MIR6023
(2 sentences)

Sequence

74968 reads, 1089.0 reads per million, 82 experiments

agcaguaaucucugaucauaUUCCAUGAAAGUGUUUUUGGAUaagauuuuuuaccauaguaaucacaaauacuagaugaccgugcucuuuuggacaauaauuucugaucaaagcauuucccuucuaaaauucaagagaaugcuuacgguaggucccucaucgaguguuugugauuacuacagucaggaaucuuauccaaagacaagucauggaauaUGAGCCGAGAUUGGUGUCUA
.(((.(((((((.(.(((((((((((((...((((((((((((((((((((.((..(((((((((((((((((.(((((((.((((...(((((........)))))...((((((((....(((........)))))))))))..))))))))....))).)))))))))))))))))..)).))))))))))))))))))))..))))))))))))).).))))))).)))...

Structure

--a   g       u a             AAG                    u  ca                 a   ----    g    cuuuuggacaauaauuucugauca        cccu   aaa 
   gca uaaucuc g ucauaUUCCAUGA   UGUUUUUGGAUaagauuuuu ac  uaguaaucacaaauacu gau    gacc ugcu                        aagcauuu    ucu   a
   ||| ||||||| | |||||||||||||   |||||||||||||||||||| ||  ||||||||||||||||| |||    |||| ||||                        ||||||||    |||    
   UGU GUUAGAG C AGUauaagguacu   acagaaaccuauucuaagga ug  aucauuaguguuuguga cua    cugg augg                        uucguaag    aga   u
AUC   G       C G             -ga                    c  ac                 g   cucc    -    ----------------------ca        ----   acu 

Annotation confidence Low

Genome context

JH137902.1: 575666-575901 [+]

Mature stu-miR6023-5p

• Accession: MIMAT0023591
• Description: Solanum tuberosum stu-miR6023-5p mature miRNA
• Sequence: 21 - UUCCAUGAAAGUGUUUUUGGAU - 42
• Evidence: not_experimental

Mature stu-miR6023-3p

• Accession: MIMAT0058178
• Description: Solanum tuberosum stu-miR6023-3p mature miRNA
• Sequence: 217 - UGAGCCGAGAUUGGUGUCUA - 236
• Evidence: experimental ; unknown

References

1. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795