Stem-loop sly-MIR6023

Accession

MI0020240

Description

Solanum lycopersicum sly-MIR6023 precursor miRNA

Literature search

7 open access papers mention sly-MIR6023
(12 sentences)

Sequence

100690 reads, 2565.0 reads per million, 82 experiments

agcaguaaucucuguucauaUUCCAUGAAAGAGUUUUUGGAUaagaucuuuuaccguaguaaucacaaauccuagacgacugugcucuuggacagaaauuucugaucaaagcauuucccuucuuaaauucaagagaaugcuuacaguaggucccucaucgaguguuugugauuacuacggucaggaaucuuauccagagacaauucauggaauaUGAGCUGAGAUUGGUGUCUA
.(((.(((((((.((((((((((((((((...((((((((((((((((((..((((((((((((((((((.((.(((.((((((...((((.((((....)))).))))(((((((....((((......)))))))))))))))))..)))........)).)))))))))))))))))).))).)))))))))))))))..)))))))))))))))).))))))).)))...

Structure

--a   g       u                AGA               -   uu                  c  -------a   -g      cucuuggacagaaauuucugaucaa       cccu    aa 
   gca uaaucuc guucauaUUCCAUGAA   GUUUUUGGAUaagau cuu  accguaguaaucacaaau cu        gac  acugug                         agcauuu    ucuu  a
   ||| ||||||| ||||||||||||||||   ||||||||||||||| |||  |||||||||||||||||| ||        |||  ||||||                         |||||||    ||||   
   UGU GUUAGAG CGAGUauaagguacuu   cagagaccuauucua gga  uggcaucauuaguguuug ga        cug  ugacau                         ucguaag    agaa  u
AUC   G       U                -aa               a   -c                  u  gcuacucc   ga      -------------------------       ----    cu 

Annotation confidence Low

Genome context

chr12: 66469562-66469795 [-]

Mature sly-miR6023-5p

• Accession: MIMAT0023592
• Description: Solanum lycopersicum sly-miR6023-5p mature miRNA
• Sequence: 21 - UUCCAUGAAAGAGUUUUUGGAU - 42
• Evidence: not_experimental

Mature sly-miR6023-3p

• Accession: MIMAT0055734
• Description: Solanum lycopersicum sly-miR6023-3p mature miRNA
• Sequence: 215 - UGAGCUGAGAUUGGUGUCUA - 234
• Evidence: experimental ; unknown

References

1. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795