Stem-loop sly-MIR6023

Accession

MI0020240

Description

Solanum lycopersicum sly-MIR6023 precursor miRNA

Literature search

6 open access papers mention sly-MIR6023
(11 sentences)

Sequence

agcaguaaucucuguucauaUUCCAUGAAAGAGUUUUUGGAUaagaucuuuuaccguaguaaucacaaauccuagacgacugugcucuuggacagaaauuucugaucaaagcauuucccuucuuaaauucaagagaaugcuuacaguaggucccucaucgaguguuugugauuacuacggucaggaaucuuauccagagacaauucauggaauaugagcugagauuggugucua
.(((.(((((((.((((((((((((((((...((((((((((((((((((..((((((((((((((((((.((.(((.((((((...((((.((((....)))).))))(((((((....((((......)))))))))))))))))..)))........)).)))))))))))))))))).))).)))))))))))))))..)))))))))))))))).))))))).)))...

Structure

--a   g       u                AGA               -   uu                  c  -------a   -g      cucuuggacagaaauuucugaucaa       cccu    aa 
   gca uaaucuc guucauaUUCCAUGAA   GUUUUUGGAUaagau cuu  accguaguaaucacaaau cu        gac  acugug                         agcauuu    ucuu  a
   ||| ||||||| ||||||||||||||||   ||||||||||||||| |||  |||||||||||||||||| ||        |||  ||||||                         |||||||    ||||   
   ugu guuagag cgaguauaagguacuu   cagagaccuauucua gga  uggcaucauuaguguuug ga        cug  ugacau                         ucguaag    agaa  u
auc   g       u                -aa               a   -c                  u  gcuacucc   ga      -------------------------       ----    cu 

Annotation confidence Not enough data

Genome context

chr12: 66469562-66469795 [-]

Mature sly-miR6023

• Accession: MIMAT0023592
• Description: Solanum lycopersicum sly-miR6023 mature miRNA
• Sequence: 21 - UUCCAUGAAAGAGUUUUUGGAU - 42
• Evidence: not_experimental

References

1. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795