Stem-loop stu-MIR6024

Accession

MI0020241

Description

Solanum tuberosum stu-MIR6024 precursor miRNA MIR6024

Gene
family

RF03598; MIR6024

Literature search

4 open access papers mention stu-MIR6024
(46 sentences)

Sequence

aaauugguaaugggaaguggAGAAACAACACUUGCUAAAAGAaguucaucagugauucucucuucuuuuggaguuuUUUUAGCAAGAGUUGUUUUCCCucuucucaauuccgucucuc
.....((...(((((((.((.((((((((.(((((((((((((.((((..((.((.....))..))..)))).))))))))))))).)))))))).)).)))))))...)).......

Structure

--aaauu  uaa       u  A        A             g    uc  -u  u 
       gg   ugggaag gg GAAACAAC CUUGCUAAAAGAa uuca  ag  ga u
       ||   ||||||| || |||||||| ||||||||||||| ||||  ||  || c
       cc   acucuuc CC UUUUGUUG GAACGAUUUUuuu aggu  uc  cu u
cucucug  uua       u  C        A             g    uu  uu  c 

Annotation confidence Not enough data

Genome context

JH137968.1: 737039-737156 [-]

Mature stu-miR6024-3p

• Accession: MIMAT0023593
• Description: Solanum tuberosum stu-miR6024-3p mature miRNA
• Sequence: 77 - UUUUAGCAAGAGUUGUUUUCCC - 98
• Evidence: experimental ; Illumina [2]

Mature stu-miR6024-5p

• Accession: MIMAT0031159
• Description: Solanum tuberosum stu-miR6024-5p mature miRNA
• Sequence: 21 - AGAAACAACACUUGCUAAAAGA - 42
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795


2. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233