Stem-loop sly-MIR6024

Accession

MI0020242

Description

Solanum lycopersicum sly-MIR6024 precursor miRNA MIR6024

Gene
family

RF03598; MIR6024

Literature search

15 open access papers mention sly-MIR6024
(81 sentences)

Sequence

610369 reads, 19442.0 reads per million, 82 experiments

aacuggaaauggggaaguggAGAAACAACACUUGCUAAAGGAaguucaccagucaucucuuuucuuuuggaguuuUUUUAGCAAGAGUUGUUUUACCucuucucaauuccgucucuc
...(((((...((((((.((.((((((((.(((((((((((((.((((..((...........))..)))).))))))))))))).)))))))).)).))))))..)))))......

Structure

---aac     aug      u  A        A             g    cc  ucau 
      uggaa   gggaag gg GAAACAAC CUUGCUAAAGGAa uuca  ag    c
      |||||   |||||| || |||||||| ||||||||||||| ||||  ||    u
      gccuu   cucuuc CC UUUUGUUG GAACGAUUUUuuu aggu  uc    c
cucucu     -aa      u  A        A             g    uu  uuuu 

Annotation confidence High

Genome context

chr1: 83238914-83239030 [-]

Mature sly-miR6024-5p

• Accession: MIMAT0055735
• Description: Solanum lycopersicum sly-miR6024-5p mature miRNA
• Sequence: 21 - AGAAACAACACUUGCUAAAGGA - 42
• Evidence: experimental ; unknown

Mature sly-miR6024-3p

• Accession: MIMAT0023594
• Description: Solanum lycopersicum sly-miR6024-3p mature miRNA
• Sequence: 76 - UUUUAGCAAGAGUUGUUUUACC - 97
• Evidence: not_experimental

References

1. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795