Stem-loop stu-MIR482c

Accession

MI0020244

Description

Solanum tuberosum stu-MIR482c precursor miRNA

Literature search

9 open access papers mention stu-MIR482c
(43 sentences)

Sequence

1599665 reads, 37061.0 reads per million, 83 experiments

gagagauuugggaagcuuuuGGAGUGGGUGGGAUGGAAAAAUaucguauuuauuuuuuuuccuuaaaaggcaaaaaagauaagaaaugagauuUUUCCUAUUCCACCCAUGCCAAuggcuuccaaucauuuacuc
(((((((...(((((((.((((.(((((((((((((((((((.((((.(((((((((((((((....))).))))))))))))..)))).)))))))).))))))))))).)))).)))))))....)))).)))

Structure

   -    -uug       u    A           -        a    -a            -   u 
gag agau    ggaagcu uuGG GUGGGUGGGAU GGAAAAAU ucgu  uuuauuuuuuuu ccu a
||| ||||    ||||||| |||| ||||||||||| |||||||| ||||  |||||||||||| |||  
cuc uuua    ccuucgg AACC UACCCACCUUA CCUUUuua agua  gaauagaaaaaa gga a
   a    cuaa       u    G           U        g    aa            c   a 

Annotation confidence High

Genome context

JH138014.1: 530969-531103 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from stu-MIR482c

Mature stu-miR482c-5p

• Accession: MIMAT0058179
• Description: Solanum tuberosum stu-miR482c-5p mature miRNA
• Sequence: 21 - GGAGUGGGUGGGAUGGAAAAAU - 42
• Evidence: experimental ; unknown

Mature stu-miR482c-3p

• Accession: MIMAT0023596
• Description: Solanum tuberosum stu-miR482c-3p mature miRNA
• Sequence: 94 - UUUCCUAUUCCACCCAUGCCAA - 115
• Evidence: not_experimental

References

1. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795