Stem-loop stu-MIR482c

Accession

MI0020244

Description

Solanum tuberosum stu-MIR482c precursor miRNA

Literature search

8 open access papers mention stu-MIR482c
(44 sentences)

Sequence

gagagauuugggaagcuuuuggagugggugggauggaaaaauaucguauuuauuuuuuuuccuuaaaaggcaaaaaagauaagaaaugagauuUUUCCUAUUCCACCCAUGCCAAuggcuuccaaucauuuacuc
(((((((...(((((((.((((.(((((((((((((((((((.((((.(((((((((((((((....))).))))))))))))..)))).)))))))).))))))))))).)))).)))))))....)))).)))

Structure

   -    -uug       u    a           -        a    -a            -   u 
gag agau    ggaagcu uugg gugggugggau ggaaaaau ucgu  uuuauuuuuuuu ccu a
||| ||||    ||||||| |||| ||||||||||| |||||||| ||||  |||||||||||| |||  
cuc uuua    ccuucgg AACC UACCCACCUUA CCUUUuua agua  gaauagaaaaaa gga a
   a    cuaa       u    G           U        g    aa            c   a 

Annotation confidence Not enough data

Genome context

JH138014.1: 530969-531103 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from stu-MIR482c

Mature stu-miR482c

• Accession: MIMAT0023596
• Description: Solanum tuberosum stu-miR482c mature miRNA
• Sequence: 94 - UUUCCUAUUCCACCCAUGCCAA - 115
• Evidence: not_experimental

References

1. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795