Stem-loop stu-MIR482b

Accession

MI0020245

Description

Solanum tuberosum stu-MIR482b precursor miRNA

Literature search

8 open access papers mention stu-MIR482b
(38 sentences)

Sequence

gaauguuucagggagcuuuuGGAGUGGGUGGCAUGGUAAGAuaucauauuuuguuuuucauaaaaaauggaauugaaaucUUACCGAUUCCCCCCAUUCCAAuggcuuccagucauuucucc
(((((.....(((((((.((((((((((.((.((((((((((.(((.(((((((((((....)))))))))))))).)))))))).)).)).)))))))))).)))))))...)))))....

Structure

----     uuuca       u          U  C  -        a   u           c 
    gaaug     gggagcu uuGGAGUGGG GG AU GGUAAGAu uca auuuuguuuuu a
    |||||     ||||||| |||||||||| || || |||||||| ||| |||||||||||  
    uuuac     ccuucgg AACCUUACCC CC UA CCAUUcua agu uaagguaaaaa u
ccuc     --uga       u          C  U  G        a   -           a 

Annotation confidence Not enough data

Genome context

JH138014.1: 538021-538142 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from stu-MIR482b

Mature stu-miR482b-3p

• Accession: MIMAT0023597
• Description: Solanum tuberosum stu-miR482b-3p mature miRNA
• Sequence: 81 - UUACCGAUUCCCCCCAUUCCAA - 102
• Evidence: experimental ; Illumina [2]

Mature stu-miR482b-5p

• Accession: MIMAT0031160
• Description: Solanum tuberosum stu-miR482b-5p mature miRNA
• Sequence: 21 - GGAGUGGGUGGCAUGGUAAGA - 41
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795


2. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233