Stem-loop stu-MIR482a

Accession

MI0020246

Description

Solanum tuberosum stu-MIR482a precursor miRNA

Literature search

8 open access papers mention stu-MIR482a
(38 sentences)

Sequence

gaguuuuucgaaaaucuaugGGAAUUGGUGGAUUGGAAAGCuuuuauuuucuucugauuagcUUUCCAAUUCCACCCAUUCCUAugguuuuucgguauccucuc
(((..(.(((((((.((((((((((.((((((((((((((((.(((........)))..)))))))))).)))))).)))))))))).))))))).)..)))..

Structure

--   uu u       u          U      -          -u   uuu 
  gag  u ucgaaaa cuaugGGAAU GGUGGA UUGGAAAGCu  uua   u
  |||  | ||||||| |||||||||| |||||| ||||||||||  |||    
  cuc  a ggcuuuu gguAUCCUUA CCACCU AACCUUUcga  agu   c
cu   cu u       u          C      U          uu   cuu 

Annotation confidence Not enough data

Genome context

JH137851.1: 1458152-1458255 [+]

Mature stu-miR482a-3p

• Accession: MIMAT0023598
• Description: Solanum tuberosum stu-miR482a-3p mature miRNA
• Sequence: 63 - UUUCCAAUUCCACCCAUUCCUA - 84
• Evidence: experimental ; Illumina [2]

Mature stu-miR482a-5p

• Accession: MIMAT0031161
• Description: Solanum tuberosum stu-miR482a-5p mature miRNA
• Sequence: 21 - GGAAUUGGUGGAUUGGAAAGC - 41
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795


2. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233