Stem-loop stu-MIR482a

Accession

MI0020246

Description

Solanum tuberosum stu-MIR482a precursor miRNA

Literature search

10 open access papers mention stu-MIR482a
(39 sentences)

Sequence

882611 reads, 17237.0 reads per million, 83 experiments

gaguuuuucgaaaaucuaugGGAAUUGGUGGAUUGGAAAGCUuuuauuuucuucugauuagcUUUCCAAUUCCACCCAUUCCUAUGGuuuuucgguauccucuc
(((..(.(((((((.((((((((((.((((((((((((((((.(((........)))..)))))))))).)))))).)))))))))).))))))).)..)))..

Structure

--   uu u       u          U      -          -u   uuu 
  gag  u ucgaaaa cuaugGGAAU GGUGGA UUGGAAAGCU  uua   u
  |||  | ||||||| |||||||||| |||||| ||||||||||  |||    
  cuc  a ggcuuuu GGUAUCCUUA CCACCU AACCUUUcga  agu   c
cu   cu u       u          C      U          uu   cuu 

Annotation confidence Medium

Genome context

JH137851.1: 1458152-1458255 [+]

Mature stu-miR482a-5p

• Accession: MIMAT0031161
• Description: Solanum tuberosum stu-miR482a-5p mature miRNA
• Sequence: 21 - GGAAUUGGUGGAUUGGAAAGCU - 42
• Evidence: experimental ; Illumina [2]

Mature stu-miR482a-3p

• Accession: MIMAT0023598
• Description: Solanum tuberosum stu-miR482a-3p mature miRNA
• Sequence: 63 - UUUCCAAUUCCACCCAUUCCUAUGG - 87
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795


2. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233