Stem-loop stu-MIR482d

Accession

MI0020248

Description

Solanum tuberosum stu-MIR482d precursor miRNA

Literature search

9 open access papers mention stu-MIR482d
(41 sentences)

Sequence

aauuuuugggaagcuuuuggCGUGAGUGGUGGGGUAAGAUAgaucuaucauauuuaugauaugaaaaaUCUUGCCUACACCGCCCAUGCCcauaucuuccaauuauuucu
........(((((.....((((((.(((((((((((((((...((((((((....)))))).))...))))))))).)))))).)))))).....)))))..........

Structure

--aauuuuug     cuuuu      A      -         Aga  -      a 
          ggaag     ggCGUG GUGGUG GGGUAAGAU   uc uaucau u
          |||||     |||||| |||||| |||||||||   || ||||||  
          ccuuc     CCGUAC CGCCAC UCCGUUCUa   ag auagua u
ucuuuauuaa     uauac      C      A         aaa  u      u 

Annotation confidence Not enough data

Genome context

JH138014.1: 531315-531424 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from stu-MIR482d

Mature stu-miR482d-3p

• Accession: MIMAT0023600
• Description: Solanum tuberosum stu-miR482d-3p mature miRNA
• Sequence: 69 - UCUUGCCUACACCGCCCAUGCC - 90
• Evidence: experimental ; Illumina [2]

Mature stu-miR482d-5p

• Accession: MIMAT0031162
• Description: Solanum tuberosum stu-miR482d-5p mature miRNA
• Sequence: 21 - CGUGAGUGGUGGGGUAAGAUA - 41
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795


2. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233