Stem-loop stu-MIR482e

Accession

MI0020249

Description

Solanum tuberosum stu-MIR482e precursor miRNA

Literature search

9 open access papers mention stu-MIR482e
(46 sentences)

Sequence

guguuucggggagguguuggAGUGGGUGGUGUGGUAAGAUUucauauuuauuuuccauaaaaauugagaUCUUGCCAAUACCGCCCAUUCCuauggcuuccgaucauuucu
(((..(((((.((.(((.((((((((((((((((((((((((((..(((((.....)))))...)))))))))))).)))))))))))))).))).))))))).)))....

Structure

----   uu     g  g   u              -            -ua     u 
    gug  ucggg ag ugu ggAGUGGGUGGUGU GGUAAGAUUuca   uuuau u
    |||  ||||| || ||| |||||||||||||| ||||||||||||   ||||| u
    uac  agccu uc gua CCUUACCCGCCAUA CCGUUCUagagu   aaaua c
ucuu   -u     -  g   u              A            uaa     c 

Annotation confidence Not enough data

Genome context

JH138014.1: 542533-542643 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from stu-MIR482e

Mature stu-miR482e-3p

• Accession: MIMAT0023601
• Description: Solanum tuberosum stu-miR482e-3p mature miRNA
• Sequence: 70 - UCUUGCCAAUACCGCCCAUUCC - 91
• Evidence: experimental ; Illumina [2]

Mature stu-miR482e-5p

• Accession: MIMAT0031163
• Description: Solanum tuberosum stu-miR482e-5p mature miRNA
• Sequence: 21 - AGUGGGUGGUGUGGUAAGAUU - 41
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795


2. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233