Stem-loop sly-MIR482b

Accession

MI0020250

Description

Solanum lycopersicum sly-MIR482b precursor miRNA

Literature search

26 open access papers mention sly-MIR482b
(366 sentences)

Sequence

2093486 reads, 19423.0 reads per million, 78 experiments

ggaaagggaugaagauuuuugggaagcuuuuggCGUGAGCGGUGGGGAAAGAUAgaucuaucauauuaguaugauaugauaaaUCUUGCCUACACCGCCCAUGCCcauggcuuccaaugauuucu
............(((((....(((((((...((((((.(((((((((.(((((..((((((((((....))))))).)))..))))).))).)))))).))))))...)))))))...)))))..

Structure

ggaaagggauga     uuug       uuu      A      -   A     Ag   -       u 
            agauu    ggaagcu   ggCGUG GCGGUG GGG AAGAU  auc uaucaua u
            |||||    |||||||   |||||| |||||| ||| |||||  ||| |||||||  
            uuuag    ccuucgg   CCGUAC CGCCAC UCC UUCUa  uag auaguau a
----------uc     -uaa       uac      C      A   G     aa   u       g 

Annotation confidence High

Genome context

chr6: 37380417-37380541 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from sly-MIR482b

Mature sly-miR482b-5p

• Accession: MIMAT0055736
• Description: Solanum lycopersicum sly-miR482b-5p mature miRNA
• Sequence: 34 - CGUGAGCGGUGGGGAAAGAUA - 54
• Evidence: experimental ; unknown

Mature sly-miR482b-3p

• Accession: MIMAT0023602
• Description: Solanum lycopersicum sly-miR482b-3p mature miRNA
• Sequence: 84 - UCUUGCCUACACCGCCCAUGCC - 105
• Evidence: not_experimental

References

1. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795