miRBase entry: nta-MIR6025a

Stem-loop nta-MIR6025a


Accession
MI0020253
Description
Nicotiana tabacum nta-MIR6025a precursor miRNA


Sequence

59470 reads, 3124.0 reads per million, 46 experiments
uuuuuuacccgacccuggcaUACCAACAAUUGAGAUAACAUCuagguuugacgaucuuuuaaguaauuaucauacauccauucuugcacaaaaguauuguuguaccuggaUGUUAUCUCAGUGUUGGCAUGcauaaguuggguaagacaua
..(((((((((((....((((.((((((.((((((((((((((((((.((((((((((((..((((.................))))..))))).))))))).)))))))))))))))))))))))).))))....)))))))))))....

Structure
--uu           ccug    A      A                  u       -     aa    uuaucau 
    uuuuacccgac    gcaU CCAACA UUGAGAUAACAUCuaggu ugacgau cuuuu  guaa       a
    |||||||||||    |||| |||||| |||||||||||||||||| ||||||| |||||  ||||       c
    agaauggguug    cGUA GGUUGU GACUCUAUUGUaggucca guuguua gaaaa  cguu       a
auac           aaua    C      -                  u       u     ca    cuuaccu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR6025a-5p

Accession MIMAT0023606
Description Nicotiana tabacum nta-miR6025a-5p mature miRNA
Sequence 21 - UACCAACAAUUGAGAUAACAUC - 42
Evidence experimental
Illumina [2]

Mature nta-miR6025a-3p

Accession MIMAT0058024
Description Nicotiana tabacum nta-miR6025a-3p mature miRNA
Sequence 111 - UGUUAUCUCAGUGUUGGCAUG - 131
Evidence experimental
unknown

References

  1. PubMed ID: 22307647
    MicroRNA regulation of plant innate immune receptors
    "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
    "Proc Natl Acad Sci U S A (2012) 109:1790-1795

  2. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28