Stem-loop nta-MIR6025b

Accession

MI0020254

Description

Nicotiana tabacum nta-MIR6025b precursor miRNA

Literature search

1 open access papers mention nta-MIR6025b
(2 sentences)

Sequence

39133 reads, 1963.0 reads per million, 45 experiments

aaaguauuguuguaccuggaUGUUAUCUCAGUGUUGGCAUGcauaaguuggguaagacauaucugaucaaaaauauuuucugagaugagauggaauauauauauuuugguguuuuaccuaguucaggcaUGCCAACUAUUGAGAUGACAUCuagguuugucga
......(((....(((((((((((((((((((((((((((((.....(((((((((((((((((.(((...............))).))))((((((....)))))).))))))))))))).....)))))))))).)))))))))))))))))))....)))

Structure

aaagua   uugu                   -          auaag             -----------------    g   aaaaau 
      uug    accuggaUGUUAUCUCAGU GUUGGCAUGc     uuggguaagacau                 aucu auc      a
      |||    ||||||||||||||||||| ||||||||||     |||||||||||||                 |||| |||      u
      agc    uggauCUACAGUAGAGUUA CAACCGUacg     gauccauuuugug                 uaga uag      u
------   uguu                   U          gacuu             guuuuauauauauaagg    g   agucuu 

Annotation confidence High

Genome context

Unknown

Mature nta-miR6025b-5p

• Accession: MIMAT0058025
• Description: Nicotiana tabacum nta-miR6025b-5p mature miRNA
• Sequence: 21 - UGUUAUCUCAGUGUUGGCAUG - 41
• Evidence: experimental ; unknown

Mature nta-miR6025b-3p

• Accession: MIMAT0023607
• Description: Nicotiana tabacum nta-miR6025b-3p mature miRNA
• Sequence: 130 - UGCCAACUAUUGAGAUGACAUC - 151
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795


2. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28