Stem-loop stu-MIR6025

Accession

MI0020255

Description

Solanum tuberosum stu-MIR6025 precursor miRNA

Literature search

2 open access papers mention stu-MIR6025
(7 sentences)

Sequence

200116 reads, 3882.0 reads per million, 83 experiments

uucuuugccuaauucugguaUACCAACAAUUGAGAUAACAUCuagguuugaugaucuuuugauuagcuaauuguauaguuaucaccuguacacuugcacaaaauuauuauugaaccuugaUGUUAUCUCAGUGUUGGCAUGcauaaauuggguaaauuuau
...(((((((((((...((((.((((((.(((((((((((((.((((((((((((.(((((....((.((.(((((((.......))))))).)))).)))))..)))))))))))).))))))))))))))))))).))))...))))))))))).....

Structure

--uuc           cug    A      A             u            -c     auua  u  u       uu 
     uuugccuaauu   guaU CCAACA UUGAGAUAACAUC agguuugaugau  uuuug    gc aa uguauag  a
     |||||||||||   |||| |||||| ||||||||||||| ||||||||||||  |||||    || || |||||||  u
     aaauggguuaa   cGUA GGUUGU GACUCUAUUGUag uccaaguuauua  aaaac    cg uu acauguc  c
uauuu           aua    C      -             u            uu     ---a  -  c       ca 

Annotation confidence High

Genome context

JH137842.1: 2036023-2036183 [-]

Mature stu-miR6025-5p

• Accession: MIMAT0023608
• Description: Solanum tuberosum stu-miR6025-5p mature miRNA
• Sequence: 21 - UACCAACAAUUGAGAUAACAUC - 42
• Evidence: not_experimental

Mature stu-miR6025-3p

• Accession: MIMAT0058180
• Description: Solanum tuberosum stu-miR6025-3p mature miRNA
• Sequence: 121 - UGUUAUCUCAGUGUUGGCAUG - 141
• Evidence: experimental ; unknown

References

1. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795