Stem-loop sly-MIR6026

Accession

MI0020257

Description

Solanum lycopersicum sly-MIR6026 precursor miRNA

Literature search

5 open access papers mention sly-MIR6026
(18 sentences)

Sequence

cacuuugauuugguaauacaacuauagccaagacaaugcuucauuauaagugcauaacuuuucacuuuauuguuugagcauuguguugauuucucuaaacuuguuuuucguugaacaagauuguuuuuucauauacucauggaaagcaacaccgugcucagaaguuagagugaaauguuaugcauuugugauuauauauuUUCUUGGCUAGAGUUGUAUUGCcaagugaaguguuuuaauug
((((((.((((((((((((((((.(((((((((.((((....((((((((((((((((.((((((((((...(((((((((.((((((...........(((((((......))))))).....((((((((......)))))))))))))).)))))))))...)))))))))).))))))))))))))))....)))).))))))))).)))))))))))))))))))))).........

Structure

---------      g                a         c    cuuc                u          uug         u      auuucucuaaacuuguuuuucguugaacaagauugu        au 
         cacuuu auuugguaauacaacu uagccaaga aaug    auuauaagugcauaac uuucacuuua   uuugagcau guguug                                    uuuuucau  a
         |||||| |||||||||||||||| ||||||||| ||||    |||||||||||||||| ||||||||||   ||||||||| ||||||                                    ||||||||   
         gugaag ugaacCGUUAUGUUGA AUCGGUUCU uuau    uaguguuuacguauug aaagugagau   agacucgug cacaac                                    gaaaggua  c
guuaauuuu      -                G         U    auau                u          uga         c      ------------------------------------        cu 

Annotation confidence Not enough data

Genome context

chr1: 832340-832581 [+]

Mature sly-miR6026

• Accession: MIMAT0023610
• Description: Solanum lycopersicum sly-miR6026 mature miRNA
• Sequence: 201 - UUCUUGGCUAGAGUUGUAUUGC - 222
• Evidence: not_experimental

References

1. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795