Stem-loop sly-MIR6027

Accession

MI0020258

Description

Solanum lycopersicum sly-MIR6027 precursor miRNA

Literature search

13 open access papers mention sly-MIR6027
(25 sentences)

Sequence

384020 reads, 9199.0 reads per million, 79 experiments

uuucguaauuuuacaugauuAUGGGUAGCACAAGGAUUAAUGUGaaacagaaaagugauaugcaaagaagauggagauucaauuguuuauuguuacgaaaaaaacacuuuuguguuucucgUGAAUCCUUCGGCUAUCCAUAAucauguugaauauguuauuu
...((((.(((.(((((((((((((((((..(((((((.(((.((((((.(((((((............((((((.(......).)))))).............))))))).)))))).))).)))))))..))))))))))))))))).)))))))......

Structure

---uuu    a   u                 AC       A   U      g       -auaugcaaagaa      g uu 
      cgua uuu acaugauuAUGGGUAGC  AAGGAUU AUG Gaaaca aaaagug             gaugga a  c
      |||| ||| |||||||||||||||||  ||||||| ||| |||||| |||||||             |||||| |   
      guau aag uguacuAAUACCUAUCG  UUCCUAA Ugc cuuugu uuuucac             uuauuu u  a
uuuauu    -   u                 GC       G   u      g       aaaaaaagcauug      g ua 

Annotation confidence High

Genome context

Unknown

Mature sly-miR6027-5p

• Accession: MIMAT0032133
• Description: Solanum lycopersicum sly-miR6027-5p mature miRNA
• Sequence: 21 - AUGGGUAGCACAAGGAUUAAUGUG - 44
• Evidence: experimental ; Illumina [2]

Mature sly-miR6027-3p

• Accession: MIMAT0023611
• Description: Solanum lycopersicum sly-miR6027-3p mature miRNA
• Sequence: 122 - UGAAUCCUUCGGCUAUCCAUAA - 143
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795


2. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739