Stem-loop stu-MIR6027

Accession

MI0020259

Description

Solanum tuberosum stu-MIR6027 precursor miRNA MIR6027

Gene
family

RF04199; MIR6027

Literature search

4 open access papers mention stu-MIR6027
(8 sentences)

Sequence

538289 reads, 11739.0 reads per million, 83 experiments

uuucauaauuuuacaugauuAUGGGUAGCACAAGGAUUAAUGUGaaacaaauaagugauaugugaagaacauuggagaauucaaagaguuaguuguuaggaagaaaacacuuuguguuucucgUGAAUCCUUCGGCUAUCCAUAAucauguugaaugugugacuu
..(((((((((.(((((((((((((((((..(((((((.(((.((((((...(((((..........((((......(((((...)))))...))))..........)))))..)))))).))).)))))))..))))))))))))))))).)))).)))))...

Structure

-uu     -    u                 AC       A   U      aau     auaugugaag    uuggag     a 
   ucaua auuu acaugauuAUGGGUAGC  AAGGAUU AUG Gaaaca   aagug          aaca      aauuc  
   ||||| |||| |||||||||||||||||  ||||||| ||| ||||||   |||||          ||||      ||||| a
   agugu uaag uguacuAAUACCUAUCG  UUCCUAA Ugc cuuugu   uucac          uugu      uugag  
uuc     g    u                 GC       G   u      -gu     aaaagaagga    ---uga     a 

Annotation confidence High

Genome context

JH137798.1: 3105798-3105962 [-]

Mature stu-miR6027-5p

• Accession: MIMAT0058181
• Description: Solanum tuberosum stu-miR6027-5p mature miRNA
• Sequence: 21 - AUGGGUAGCACAAGGAUUAAUGUG - 44
• Evidence: experimental ; unknown

Mature stu-miR6027-3p

• Accession: MIMAT0023612
• Description: Solanum tuberosum stu-miR6027-3p mature miRNA
• Sequence: 124 - UGAAUCCUUCGGCUAUCCAUAA - 145
• Evidence: not_experimental

References

1. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795