miRBase entry: ame-mir-6038

Stem-loop ame-mir-6038

Accession

MI0020305

Description

Apis mellifera ame-mir-6038 precursor miRNA

Sequence

aaagccgucuUAUGUUUCUGUCUUAUUUCAUUguaaaauugcgauaugaaauaugacauaaacuuaagcugggua
..(.(((.((((.((((.((((.((((((((((((....)))))..))))))).)))).)))).)))).))).).

Structure

aa g   u    U    C    U       --     a 
  a ccg cuUA GUUU UGUC UAUUUCA  UUgua a
  | ||| |||| |||| |||| |||||||  |||||  
  u ggu gaau caaa acag auaaagu  agcgu a
-a g   c    u    u    u       au     u

Annotation confidence Not enough data

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Genome context

CM000055.5: 13825885-13825959 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ame-mir-6038

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ame-miR-6038-5p

Accession	MIMAT0023658
Description	Apis mellifera ame-miR-6038-5p mature miRNA
Sequence	11 - UAUGUUUCUGUCUUAUUUCAUU - 32
Evidence	experimental Illumina [1]

References

PubMed ID: 22458842
Next-generation small RNA sequencing for microRNAs profiling in Apis mellifera: comparison between nurses and foragers
"Liu F, Peng W, Li Z, Li W, Li L, Pan J, Zhang S, Miao Y, Chen S, Su S"
"Insect Mol Biol (2012) 21:297-303