Stem-loop ame-mir-6038

Accession

MI0020305

Description

Apis mellifera ame-mir-6038 precursor miRNA

Sequence

4711 reads, 60.0 reads per million, 24 experiments

aaagccgucuUAUGUUUCUGUCUUAUUUCAUUguaaaauugcgauaUGAAAUAUGACAUAAACUUAAGcugggua
..(.(((.((((.((((.((((.((((((((((((....)))))..))))))).)))).)))).)))).))).).

Structure

aa g   u    U    C    U       --     a 
  a ccg cuUA GUUU UGUC UAUUUCA  UUgua a
  | ||| |||| |||| |||| |||||||  |||||  
  u ggu GAAU CAAA ACAG AUAAAGU  agcgu a
-a g   c    U    U    U       au     u 

Annotation confidence High

Genome context

CM000055.5: 13825885-13825959 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ame-mir-6038

Mature ame-miR-6038-5p

• Accession: MIMAT0023658
• Description: Apis mellifera ame-miR-6038-5p mature miRNA
• Sequence: 11 - UAUGUUUCUGUCUUAUUUCAUU - 32
• Evidence: experimental ; Illumina [1]

Mature ame-miR-6038-3p

• Accession: MIMAT0053110
• Description: Apis mellifera ame-miR-6038-3p mature miRNA
• Sequence: 47 - UGAAAUAUGACAUAAACUUAAG - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22458842
   Next-generation small RNA sequencing for microRNAs profiling in Apis mellifera: comparison between nurses and foragers
   "Liu F, Peng W, Li Z, Li W, Li L, Pan J, Zhang S, Miao Y, Chen S, Su S"
   "Insect Mol Biol (2012) 21:297-303