Stem-loop ame-mir-6040

Accession

MI0020307

Description

Apis mellifera ame-mir-6040 precursor miRNA

Sequence

ggcauauucgagaccucaguccagccuuguacuguguugcguaacuccaUAGUACGGGCAGUACUGGGAaaucgugugu
.(((((..(((...((((((.(.((((.((((((((..(.....)..)))))))))))).).))))))...))))))))

Structure

g     uu   gac      c a    u        uu c 
 gcaua  cga   cucagu c gccu guacugug  g g
 |||||  |||   |||||| | |||| ||||||||  | u
 ugugu  gcu   GGGUCA G CGGG CAUGAUac  c a
-     --   aaA      U A    -        cu a 

Annotation confidence Low

Genome context

CM000057.5: 11872753-11872831 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ame-mir-6040

Mature ame-miR-6040-3p

• Accession: MIMAT0023660
• Description: Apis mellifera ame-miR-6040-3p mature miRNA
• Sequence: 50 - UAGUACGGGCAGUACUGGGA - 69
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 22458842
   Next-generation small RNA sequencing for microRNAs profiling in Apis mellifera: comparison between nurses and foragers
   "Liu F, Peng W, Li Z, Li W, Li L, Pan J, Zhang S, Miao Y, Chen S, Su S"
   "Insect Mol Biol (2012) 21:297-303


2. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670