miRBase entry: ame-mir-6000b

Stem-loop ame-mir-6000b

Accession

MI0020308

Description

Apis mellifera ame-mir-6000b precursor miRNA

Sequence

uugaugaugcgucuuguggguacuucucguacuauaaauuugaugauaUAGAGACGAGUAGUACCCACGAGucgucaccac
.((.(((((...((((((((((((.(((((.(((((..........)))))..))))).)))))))))))).))))).)).

Structure

u  a     cgu            u     -a     aauu 
 ug ugaug   cuuguggguacu cucgu  cuaua    u
 || |||||   |||||||||||| |||||  |||||     
 ac acugc   GAGCACCCAUGA GAGCA  GAUau    g
c  c     --u            U     GA     agua

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

CM000057.5: 11872166-11872246 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ame-mir-6000b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ame-miR-6000b-3p

Accession	MIMAT0023661
Description	Apis mellifera ame-miR-6000b-3p mature miRNA
Sequence	49 - UAGAGACGAGUAGUACCCACGAG - 71
Evidence	experimental Illumina [1-2]

References

PubMed ID: 22458842
Next-generation small RNA sequencing for microRNAs profiling in Apis mellifera: comparison between nurses and foragers
"Liu F, Peng W, Li Z, Li W, Li L, Pan J, Zhang S, Miao Y, Chen S, Su S"
"Insect Mol Biol (2012) 21:297-303

PubMed ID: 26853694
MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
"Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
"Insect Mol Biol (2016) 25:216-226