Stem-loop ame-mir-6047a

Accession

MI0020318

Description

Apis mellifera ame-mir-6047a precursor miRNA

Sequence

uguuuuguuuAGUGGACUGACUGGCCUGUGCUgcuucccgcagUCCACAGCCUACAGUCCACAAUuuccugaucu
...........((((((((...(((.((((((((.....))))..)))))))..)))))))).............

Structure

--uguuuuguuuA        ACU   C    --    u 
             GUGGACUG   GGC UGUG  CUgc u
             ||||||||   ||| ||||  |||| c
             CACCUGAC   CCG ACAC  gacg c
ucuaguccuuUAA        -AU   -    CU    c 

Annotation confidence Low

Genome context

GL630354.1: 170663-170737 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ame-mir-6047a

Mature ame-miR-6047a-3p

• Accession: MIMAT0023671
• Description: Apis mellifera ame-miR-6047a-3p mature miRNA
• Sequence: 44 - UCCACAGCCUACAGUCCACAAU - 65
• Evidence: experimental ; Illumina [1,3]

Mature ame-miR-6047a-5p

• Accession: MIMAT0037456
• Description: Apis mellifera ame-miR-6047a-5p mature miRNA
• Sequence: 11 - AGUGGACUGACUGGCCUGUGCU - 32
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22458842
   Next-generation small RNA sequencing for microRNAs profiling in Apis mellifera: comparison between nurses and foragers
   "Liu F, Peng W, Li Z, Li W, Li L, Pan J, Zhang S, Miao Y, Chen S, Su S"
   "Insect Mol Biol (2012) 21:297-303


2. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670


3. PubMed ID: 26853694
   MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
   "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
   "Insect Mol Biol (2016) 25:216-226