miRBase entry: ptr-mir-222

Stem-loop ptr-mir-222

Accession

MI0020573

Description

Pan troglodytes ptr-mir-222 precursor miRNA

Sequence

cagcugcuggaagguguagguacccucaauggcucaguagccaguguagauccugucuuucguaaucagcAGCUACAUCUGGCUACUGGGUCucugauggcaucuucuagcu
.....(((((((((((......((.(((..(((((((((((((((((((...(((...........)))...))))).))))))))))))))..))).))))))))))))).

Structure

cagcu           uaggua  c   au              -     auc   ucuu 
     gcuggaaggug      cc uca  ggcucaguagccag uguag   cug    u
     |||||||||||      || |||  |||||||||||||| |||||   |||    c
     cgaucuucuac      gg agu  CUGGGUCAUCGGUC ACAUC   gac    g
----u           ------  u   cu              U     GAc   uaau

Annotation confidence Not enough data

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Genome context

chrX: 45932349-45932460 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-222

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ptr-miR-222

Accession	MIMAT0024026
Description	Pan troglodytes ptr-miR-222 mature miRNA
Sequence	71 - AGCUACAUCUGGCUACUGGGUC - 92
Evidence	experimental Illumina [1]

References

PubMed ID: 22453055
Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
"Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
"BMC Genomics (2012) 13:116